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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_7037160_7039550_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7037160 - 7039550
Intron Length:
2391

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
TTGCTTTTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATCAT
U12 Branch Point Sequence:
TCTAATGTAACT
Flanking Amino Acid:
ETNAPVVAGQRLQ*
Intron Amino Acid Position:
1900

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.7
37.2
Major BPS
79.4
0.73
1
80.1
32
Major PPT
79
0.65
0.8
73
37.3
Minor 5ss
31.6
-2.1
3.1
40
45.7
Minor BPS
49.1
0.01
2.2
73.22
43.7

Associated Gene:

Gene:
NCOA6
Ensembl Gene ID:
ENSAPLG00000013856
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039361
7037150 - 7064440
27291