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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_7039588_7043358_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7039588 - 7043358
Intron Length:
3771

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATTAT
U12 Branch Point Sequence:
CAGACCTAAAAA
Flanking Amino Acid:
GSHQELLQNTELETNAPVVA
Intron Amino Acid Position:
1865

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
23.1
Major BPS
68.1
0.45
1
58.1
38.5
Major PPT
89
0.88
0.6
85.4
21.8
Minor 5ss
40.5
-1.1
2.7
50.7
45.7
Minor BPS
48
-0.1
1.8
54.46
43.8

Associated Gene:

Gene:
NCOA6
Ensembl Gene ID:
ENSAPLG00000013856
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033282
7033323 - 7064440
31118