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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_7046335_7047127_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7046335 - 7047127
Intron Length:
793

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTAGGA
5'SS Class:
major
3'SS Sequence:
CATGTCTTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTGATGAATG
Flanking Amino Acid:
KLSDFASRPPGYPSQPVEQR
Intron Amino Acid Position:
873

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.6
0.46
1.1
58.9
40.5
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
72
0.49
0.8
69.6
36.4
Minor 5ss
28.5
-2.5
3.5
38.8
46.3
Minor BPS
49.2
-0.2
2.2
65.49
42.4

Associated Gene:

Gene:
NCOA6
Ensembl Gene ID:
ENSAPLG00000013856
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014448
7033323 - 7064440
31118
ENSAPLT00000039361
7037150 - 7064440
27291
ENSAPLT00000033282
7033323 - 7064440
31118