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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_7047250_7052723_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7047250 - 7052723
Intron Length:
5474

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAGGTTTA
5'SS Class:
major
3'SS Sequence:
ATTTTTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
TGTATCTAAATT
Flanking Amino Acid:
KKNNQQLEQTNSSEPRPGGL
Intron Amino Acid Position:
832

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
77.8
33.2
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
91.3
0.93
0.7
89.4
26.5
Minor 5ss
44.1
-0.6
3.1
57.4
41.7
Minor BPS
60.2
0.4
1.7
76.87
40

Associated Gene:

Gene:
NCOA6
Ensembl Gene ID:
ENSAPLG00000013856
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033282
7033323 - 7064440
31118
ENSAPLT00000014448
7033323 - 7064440
31118
ENSAPLT00000039361
7037150 - 7064440
27291