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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_705037_705330_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
705037 - 705330
Intron Length:
294

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGTGAAA
5'SS Class:
major
3'SS Sequence:
TTTTCTCCTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
GCGATTTCAATT
Flanking Amino Acid:
LEDVVESAVKVAEEKQVTEL
Intron Amino Acid Position:
348

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.5
1.1
67.7
39
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
87
0.83
0.6
86.1
20.7
Minor 5ss
30.3
-2.3
3.3
39.1
46.3
Minor BPS
47.4
-0.1
1.5
56.63
40.7

Associated Gene:

Gene:
ARFGEF2
Ensembl Gene ID:
ENSAPLG00000010118
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042920
684618 - 716787
32170