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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_705037_706056_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
705037 - 706056
Intron Length:
1020

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAACAAG
5'SS Class:
major
3'SS Sequence:
TTTTCTCCTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
GCGATTTCAATT
Flanking Amino Acid:
SGQDLIPSASVAEEKQVTEL
Intron Amino Acid Position:
324

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
67.3
39.7
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
87
0.83
0.6
86.1
20.7
Minor 5ss
32.6
-2
2.9
38.7
46.6
Minor BPS
47.4
-0.1
1.5
56.63
40.7

Associated Gene:

Gene:
ARFGEF2
Ensembl Gene ID:
ENSAPLG00000010118
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010669
684679 - 715920
31242