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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_705403_706056_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
705403 - 706056
Intron Length:
654

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAACAAG
5'SS Class:
major
3'SS Sequence:
TCTGTTTCATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
AACTCATAAAAT
Flanking Amino Acid:
SGQDLIPSASDGTTDGGKEM
Intron Amino Acid Position:
324

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
67.3
39.7
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
78.5
0.64
0.9
78.1
35.1
Minor 5ss
32.6
-2
2.9
38.7
46.6
Minor BPS
48.2
-0
2
66.26
43.7

Associated Gene:

Gene:
ARFGEF2
Ensembl Gene ID:
ENSAPLG00000010118
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042920
684618 - 716787
32170