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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_7058526_7059537_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7058526 - 7059537
Intron Length:
1012

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGTAACA
5'SS Class:
major
3'SS Sequence:
GCTATTTTAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
ACTTTTTTACTT
Flanking Amino Acid:
PRTPRPSSQPDAMDPLLSGL
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.7
0.42
1.1
63.2
36.7
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
69.8
0.45
1
65.7
39.7
Minor 5ss
27
-2.6
2.9
32.4
41.9
Minor BPS
59.4
0.37
1.6
72.81
39.3

Associated Gene:

Gene:
NCOA6
Ensembl Gene ID:
ENSAPLG00000013856
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014448
7033323 - 7064440
31118
ENSAPLT00000039361
7037150 - 7064440
27291
ENSAPLT00000033282
7033323 - 7064440
31118