About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_7059667_7061018_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7059667 - 7061018
Intron Length:
1352

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTTT
U12 Branch Point Sequence:
TTTTTTTTTAAG
Flanking Amino Acid:
ETGFPMQGGQGLIRMSNAAA
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
90.3
22.3
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
88.4
0.86
0.9
94.6
18.5
Minor 5ss
45.5
-0.5
3
66.9
44.4
Minor BPS
56.3
0.05
1.8
67.7
39.9

Associated Gene:

Gene:
NCOA6
Ensembl Gene ID:
ENSAPLG00000013856
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033282
7033323 - 7064440
31118
ENSAPLT00000014448
7033323 - 7064440
31118
ENSAPLT00000039361
7037150 - 7064440
27291