About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_7061873_7064326_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7061873 - 7064326
Intron Length:
2454

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAATGTAT
5'SS Class:
major
3'SS Sequence:
TTTTTCTTTTAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGAAA
U12 Branch Point Sequence:
TTTTCTTTTAAG
Flanking Amino Acid:
MESNQLKLQKI
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.1
68.5
38.9
Major BPS
65.4
0.38
1.4
75.9
36.3
Major PPT
85.6
0.8
0.9
91.1
21.3
Minor 5ss
38
-1.4
3.3
47.2
48.3
Minor BPS
62.7
0.26
1.8
72.54
40

Associated Gene:

Gene:
NCOA6
Ensembl Gene ID:
ENSAPLG00000013856
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014448
7033323 - 7064440
31118
ENSAPLT00000039361
7037150 - 7064440
27291
ENSAPLT00000033282
7033323 - 7064440
31118