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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_707972_708670_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
707972 - 708670
Intron Length:
699

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGCTTC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTACGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTCTTTTTACGT
Flanking Amino Acid:
IVSTSLDCLQKLIAYGHITG
Intron Amino Acid Position:
142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
76
34.8
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
79.4
0.66
0.8
77.3
30.3
Minor 5ss
50.5
0.02
2.7
68.2
36.7
Minor BPS
54
0.2
1.9
74.22
43.6

Associated Gene:

Gene:
ARFGEF2
Ensembl Gene ID:
ENSAPLG00000010118
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042920
684618 - 716787
32170
ENSAPLT00000010669
684679 - 715920
31242