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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_7087734_7088495_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7087734 - 7088495
Intron Length:
762

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGGAG
5'SS Class:
major
3'SS Sequence:
TGTTTCTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTTAT
U12 Branch Point Sequence:
TGTTATGAGATT
Flanking Amino Acid:
GPDDFIVVAVSSLNRPFGSG
Intron Amino Acid Position:
597

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
66.3
39.3
Major BPS
72.5
0.56
1.2
63.4
44
Major PPT
90.6
0.91
0.7
88.7
28.3
Minor 5ss
27.9
-2.5
3.5
36.8
47.7
Minor BPS
41.6
-0.5
2.3
63.86
41.3

Associated Gene:

Gene:
GGT7
Ensembl Gene ID:
ENSAPLG00000013413
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013980
7081350 - 7100904
19555