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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_7089456_7089890_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7089456 - 7089890
Intron Length:
435

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGGA
5'SS Class:
strong_major
3'SS Sequence:
GTGTTCAACTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAA
U12 Branch Point Sequence:
GTGTGTTCAACT
Flanking Amino Acid:
RGNILHWMAETLKVALSQAS
Intron Amino Acid Position:
517

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
75.2
35.1
Major BPS
75.6
0.64
1.1
77.7
37.1
Major PPT
62.2
0.28
1
60.2
40.6
Minor 5ss
29.8
-2.3
3.3
38.8
46.3
Minor BPS
52.8
0.16
2
72.67
44.4

Associated Gene:

Gene:
GGT7
Ensembl Gene ID:
ENSAPLG00000013413
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013980
7081350 - 7100904
19555