About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_7090019_7090710_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7090019 - 7090710
Intron Length:
692

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATGCT
5'SS Class:
strong_major
3'SS Sequence:
CTTCCCTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
TGGAACTTAATT
Flanking Amino Acid:
VEDPVHTVYRGHLVLTPPPP
Intron Amino Acid Position:
474

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
81.2
30.6
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
81.1
0.7
0.7
75.4
26.6
Minor 5ss
34.7
-1.7
3.3
50.4
46
Minor BPS
62.6
0.48
1.6
74.75
41.8

Associated Gene:

Gene:
GGT7
Ensembl Gene ID:
ENSAPLG00000013413
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013980
7081350 - 7100904
19555