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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_7094265_7094811_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7094265 - 7094811
Intron Length:
547

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGAGC
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTTCTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCTTTTTCATC
Flanking Amino Acid:
LEGDLQKDTKPGLLVGVPGM
Intron Amino Acid Position:
333

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
73
38.2
Major BPS
100
1.24
0.5
100
0
Major PPT
88
0.85
0.7
83.2
25.3
Minor 5ss
27.2
-2.6
3
33.9
41.8
Minor BPS
57.4
0.21
1.7
68.66
38.1

Associated Gene:

Gene:
GGT7
Ensembl Gene ID:
ENSAPLG00000013413
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013980
7081350 - 7100904
19555