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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_7096852_7100402_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
7096852 - 7100402
Intron Length:
3551

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGGGGC
5'SS Class:
major
3'SS Sequence:
GCTGCTCACAAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGCTCAA
U12 Branch Point Sequence:
CAATACCTAACC
Flanking Amino Acid:
EDAFLGEQDTDPDSFLKSAR
Intron Amino Acid Position:
168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
59.3
39.8
Major BPS
70.6
0.51
1.1
71.6
36.4
Major PPT
53
0.07
1.1
52
36.3
Minor 5ss
23.7
-3
3.3
23.4
37.6
Minor BPS
51.4
0.02
1.9
62.68
41.9

Associated Gene:

Gene:
GGT7
Ensembl Gene ID:
ENSAPLG00000013413
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013980
7081350 - 7100904
19555