Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_7134902_7136476_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7134902 - 7136476

Intron Length:

1575

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTGAGTCTG

5'SS Class:

strong_major

3'SS Sequence:

CTTTCCCTGGTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTTAT

U12 Branch Point Sequence:

TGTATTCTAACA

Flanking Amino Acid:

QFHGLCEQNLNPNANPRPTA

Intron Amino Acid Position:

937

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.6

0.77

0.9

70.5

41.3

Major BPS

84.1

0.85

0.9

75.3

39.4

Major PPT

72.7

0.51

0.9

69.9

30.9

Minor 5ss

32.5

-2

38.1

40.9

Minor BPS

0.19

1.7

69.24

36.7

Associated Gene:

Gene:

DLGAP4

Ensembl Gene ID:

ENSAPLG00000012891

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013457

7133137 - 7283068

149932

ENSAPLT00000035844

7133137 - 7283068

149932

ENSAPLT00000046680

7133137 - 7281715

148579

ENSAPLT00000032178

7133137 - 7144409

11273

ENSAPLT00000046168

7133137 - 7281715

148579

ENSAPLT00000025116

7133713 - 7173085

39373

ENSAPLT00000039950

7133137 - 7260374

127238

ENSAPLT00000023694

7133713 - 7173114

39402

ENSAPLT00000038217

7133713 - 7141383

7671