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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_7141361_7173083_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7141361 - 7173083
Intron Length:
31723

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTGAG
5'SS Class:
major
3'SS Sequence:
TCCATTTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TCCATTTTTATA
Flanking Amino Acid:
MKNHHPDPDT
Intron Amino Acid Position:
1

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
70.4
35.5
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
80.3
0.68
0.8
75.6
32.9
Minor 5ss
29
-2.4
3.2
35.6
41.4
Minor BPS
47.7
-0.1
1.6
54.2
39

Associated Gene:

Gene:
DLGAP4
Ensembl Gene ID:
ENSAPLG00000012891
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025116
7133713 - 7173085
39373