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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_7179985_7182932_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7179985 - 7182932
Intron Length:
2948

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATGC
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAC
U12 Branch Point Sequence:
TGGCCTTTAACC
Flanking Amino Acid:
SVNESSCINQIFGPPSLIPQ
Intron Amino Acid Position:
520

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.8
72
34.3
Major BPS
77.3
0.68
1
79.3
29.4
Major PPT
87.7
0.85
0.7
80.3
31.8
Minor 5ss
32.8
-2
3
41.8
45
Minor BPS
71.3
0.65
1.2
72.61
38.3

Associated Gene:

Gene:
DLGAP4
Ensembl Gene ID:
ENSAPLG00000012891
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046680
7133137 - 7281715
148579
ENSAPLT00000039950
7133137 - 7260374
127238
ENSAPLT00000035844
7133137 - 7283068
149932
ENSAPLT00000013457
7133137 - 7283068
149932