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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_7190821_7192169_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7190821 - 7192169
Intron Length:
1349

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTGCA
5'SS Class:
strong_major
3'SS Sequence:
CATTTCTTGACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
CATTTCTTGACA
Flanking Amino Acid:
HQDLAYHYLQPDGGLWAQLG
Intron Amino Acid Position:
409

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
71.1
34.7
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
76.2
0.59
1
72.3
37.5
Minor 5ss
26.1
-2.7
3.2
32
42.6
Minor BPS
73
0.72
1.2
74.62
36.9

Associated Gene:

Gene:
DLGAP4
Ensembl Gene ID:
ENSAPLG00000012891
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046168
7133137 - 7281715
148579
ENSAPLT00000039950
7133137 - 7260374
127238
ENSAPLT00000035844
7133137 - 7283068
149932
ENSAPLT00000046680
7133137 - 7281715
148579