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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_7193212_7201683_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
7193212 - 7201683
Intron Length:
8472

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGGCAT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTCCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAG
U12 Branch Point Sequence:
ACTCTCTGAGCA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
69.7
42.4
Major BPS
71
0.52
1.5
79.6
35.6
Major PPT
85.3
0.79
0.7
77.3
31.5
Minor 5ss
31.3
-2.1
3.6
46.8
48.5
Minor BPS
49
-0
1.7
59.94
39.7

Associated Gene:

Gene:
DLGAP4
Ensembl Gene ID:
ENSAPLG00000012891
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039950
7133137 - 7260374
127238