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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_7193212_7260236_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7193212 - 7260236
Intron Length:
67025

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTGAGTGCT
5'SS Class:
major
3'SS Sequence:
CTTCTTCCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAG
U12 Branch Point Sequence:
ACTCTCTGAGCA
Flanking Amino Acid:
EEAPQTATLRLCRGFCGEQG
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.1
68.2
36.6
Major BPS
71
0.52
1.5
79.6
35.6
Major PPT
85.3
0.79
0.7
77.3
31.5
Minor 5ss
32.8
-2
3.3
51.5
44.9
Minor BPS
49
-0
1.7
59.94
39.7

Associated Gene:

Gene:
DLGAP4
Ensembl Gene ID:
ENSAPLG00000012891
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013457
7133137 - 7283068
149932
ENSAPLT00000046680
7133137 - 7281715
148579
ENSAPLT00000046168
7133137 - 7281715
148579
ENSAPLT00000035844
7133137 - 7283068
149932