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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_7201778_7260236_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
7201778 - 7260236
Intron Length:
58459

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTGAGTGCT
5'SS Class:
major
3'SS Sequence:
CTTTGCCTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTGAC
U12 Branch Point Sequence:
GTGACCTGAGGA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.1
68.2
36.6
Major BPS
59
0.22
1.2
52.4
43.3
Major PPT
73.7
0.53
1
69.4
36.8
Minor 5ss
32.8
-2
3.3
51.5
44.9
Minor BPS
44.6
-0.4
2
54.03
44

Associated Gene:

Gene:
DLGAP4
Ensembl Gene ID:
ENSAPLG00000012891
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039950
7133137 - 7260374
127238