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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_7260375_7282947_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7260375 - 7282947
Intron Length:
22573

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCGGTGCT
5'SS Class:
major
3'SS Sequence:
TTGTCCTCCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAA
U12 Branch Point Sequence:
CCTTCCTGAACT
Flanking Amino Acid:
GCRAGVQDPQSPRSIVKQLP
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.3
71.9
36.2
Major BPS
69.6
0.49
1
59.5
39
Major PPT
79.5
0.66
0.8
77.6
31.2
Minor 5ss
29.3
-2.4
3.3
41.8
44.9
Minor BPS
74.9
0.86
1.4
84.75
41.8

Associated Gene:

Gene:
DLGAP4
Ensembl Gene ID:
ENSAPLG00000012891
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035844
7133137 - 7283068
149932
ENSAPLT00000013457
7133137 - 7283068
149932