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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_7361128_7361595_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7361128 - 7361595
Intron Length:
468

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGCCCC
5'SS Class:
major
3'SS Sequence:
CCTGCACACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTGAC
U12 Branch Point Sequence:
TCTCCCTGCACA
Flanking Amino Acid:
RYTMSRSLDGEFSRPASVSE
Intron Amino Acid Position:
431

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
62.4
42.4
Major BPS
59
0.22
1.2
52.4
43.3
Major PPT
61.7
0.26
0.9
54
34.6
Minor 5ss
45.2
-0.5
2.7
60.3
44.3
Minor BPS
55
0.15
2
69.78
42.3

Associated Gene:

Gene:
EPB41L1
Ensembl Gene ID:
ENSAPLG00000012144
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024183
7334963 - 7398386
63424
ENSAPLT00000012674
7334963 - 7398386
63424