About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_7363293_7363962_R


Intron Information:

Intron Rank:
8

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
7363293 - 7363962

Intron Length:
670

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAG|GTACTAGGC

5'SS Class:
major

3'SS Sequence:
TTGCCTCCTCCAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTCTGAA

U12 Branch Point Sequence:
TCTGAACCATCT

Flanking Amino Acid:
MYGVDLHHAKDSEGIDIMLG

Intron Amino Acid Position:
289

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
69.3
0.46
1.1
57.3
40.6

Major BPS
82.1
0.8
0.8
71.6
36.4

Major PPT
78.8
0.65
0.8
70
36.5

Minor 5ss
29.8
-2.3
3.5
42.4
44.4

Minor BPS
35.3
-1
2.2
55.18
46

Associated Gene:

Gene:
EPB41L1

Ensembl Gene ID:

Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

7334963 - 7398386
63424

7334963 - 7398386
63424