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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_7444264_7447334_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7444264 - 7447334
Intron Length:
3071

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTACTGTCA
5'SS Class:
major
3'SS Sequence:
TGATATCATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATCAT
U12 Branch Point Sequence:
TTCCCTTTGATA
Flanking Amino Acid:
PHETYFCITTGWLNYPLEKI
Intron Amino Acid Position:
240

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.8
0.25
1.2
53.6
40
Major BPS
79.4
0.73
1
80.1
32
Major PPT
66.4
0.37
1
63.7
42.6
Minor 5ss
36.5
-1.5
3.4
47.9
47.7
Minor BPS
66.2
0.5
1.2
71.24
35.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012085
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012579
7443333 - 7485320
41988
ENSAPLT00000039644
7443333 - 7492651
49319
ENSAPLT00000032605
7443333 - 7492651
49319
ENSAPLT00000027215
7443333 - 7464199
20867