About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_7447548_7448186_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7447548 - 7448186
Intron Length:
639

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTGT
5'SS Class:
strong_major
3'SS Sequence:
CCTTGTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAA
U12 Branch Point Sequence:
AAGTACTTAAAG
Flanking Amino Acid:
MAYKFVSFSPEALYETCPWE
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.9
78.8
38.3
Major BPS
74.4
0.61
0.9
63.9
34.9
Major PPT
85.1
0.79
0.8
79.6
32.3
Minor 5ss
45.6
-0.5
2.9
65
46.2
Minor BPS
55.5
0.03
1.7
57.81
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012085
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032605
7443333 - 7492651
49319
ENSAPLT00000027215
7443333 - 7464199
20867
ENSAPLT00000012579
7443333 - 7485320
41988
ENSAPLT00000039644
7443333 - 7492651
49319