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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_7448332_7449456_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7448332 - 7449456
Intron Length:
1125

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGAGAT
5'SS Class:
major
3'SS Sequence:
TTTGTTTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAA
U12 Branch Point Sequence:
TGTTTATCAATT
Flanking Amino Acid:
GSVELPIVGKAFIRPFREHH
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.9
0.52
1.2
68.9
35.6
Major BPS
79
0.72
1
80.3
31.7
Major PPT
88.9
0.88
0.7
88.2
29.1
Minor 5ss
34.5
-1.8
3.3
47.4
48.1
Minor BPS
57.5
0.32
1.8
78.05
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012085
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032605
7443333 - 7492651
49319
ENSAPLT00000027215
7443333 - 7464199
20867
ENSAPLT00000012579
7443333 - 7485320
41988
ENSAPLT00000039644
7443333 - 7492651
49319