About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_7449549_7460330_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7449549 - 7460330
Intron Length:
10782

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCATTCAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TGTCTCTTCATT
Flanking Amino Acid:
EHTPSIIVGIFAGVITADFL
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
85.3
25.4
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
70.4
0.46
1
68.2
36.5
Minor 5ss
37.5
-1.4
2.8
46.9
41.8
Minor BPS
59.8
0.39
1.7
77.64
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012085
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032605
7443333 - 7492651
49319
ENSAPLT00000027215
7443333 - 7464199
20867
ENSAPLT00000012579
7443333 - 7485320
41988
ENSAPLT00000039644
7443333 - 7492651
49319