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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_7460451_7466288_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7460451 - 7466288
Intron Length:
5838

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCCAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATGAA
U12 Branch Point Sequence:
TCTTTTCCAACA
Flanking Amino Acid:
PDSLHVVCQRGKRLQEWISV
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
71.4
36.8
Major BPS
58.9
0.22
1
49.8
35.1
Major PPT
81.3
0.7
0.8
77.7
29.6
Minor 5ss
34.6
-1.8
2.8
40.9
45.4
Minor BPS
50.9
0.03
1.9
67.52
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012085
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032605
7443333 - 7492651
49319
ENSAPLT00000012579
7443333 - 7485320
41988
ENSAPLT00000039644
7443333 - 7492651
49319