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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_7466381_7485231_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7466381 - 7485231
Intron Length:
18851

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAACAA
U12 Branch Point Sequence:
AACCCTCTAAGT
Flanking Amino Acid:
WLPCTAACSHGYSHRAREEW
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
1
72.3
39.5
Major BPS
54
0.1
1.1
61.6
34.2
Major PPT
90.7
0.92
0.7
88.9
28.1
Minor 5ss
34.1
-1.8
2.9
36.4
40.6
Minor BPS
46.6
-0.1
1.9
61.62
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012085
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012579
7443333 - 7485320
41988