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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_7473904_7475027_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7473904 - 7475027
Intron Length:
1124

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGAGCAG
5'SS Class:
major
3'SS Sequence:
CTTATGTTTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TGTTCTCTAAGC
Flanking Amino Acid:
TAENERLQKKFTGTNIRK*
Intron Amino Acid Position:
299

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.7
0.32
1.1
49.8
42.5
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
78.3
0.64
0.9
73
37.2
Minor 5ss
22.6
-3.2
3.3
28.1
44.1
Minor BPS
56.7
0.19
2
71.68
39.5

Associated Gene:

Gene:
CEBPB
Ensembl Gene ID:
ENSAPLG00000020861
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047956
7473010 - 7475054
2045