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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_7636192_7664120_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7636192 - 7664120
Intron Length:
27929

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
ACTTACTTATTT
Flanking Amino Acid:
QAASWAAMYQDIRHEASDFP
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
67.9
37.4
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
86.5
0.82
0.9
84.6
36
Minor 5ss
24.1
-3
3.3
32
42.8
Minor BPS
58.9
0.36
1.8
75.17
41.9

Associated Gene:

Gene:
PTPN1
Ensembl Gene ID:
ENSAPLG00000008547
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031671
7636129 - 7677648
41520