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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_7666074_7668051_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7666074 - 7668051
Intron Length:
1978

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTGCA
5'SS Class:
strong_major
3'SS Sequence:
TCTGTCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GAATAAC
U12 Branch Point Sequence:
TAACGCTTATTT
Flanking Amino Acid:
EAQRSYILTQGPLPNTCGHF
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
77
31.5
Major BPS
52.4
0.06
1.2
56
37.3
Major PPT
82.9
0.74
0.8
77.1
31.6
Minor 5ss
33
-1.9
3.1
42.1
44.5
Minor BPS
48.8
-0
2
67.61
43.1

Associated Gene:

Gene:
PTPN1
Ensembl Gene ID:
ENSAPLG00000008547
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008897
7640298 - 7677140
36843
ENSAPLT00000031671
7636129 - 7677648
41520