About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_7674141_7676932_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7674141 - 7676932
Intron Length:
2792

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTCCT
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTCCTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
CAGTACTGAATA
Flanking Amino Acid:
ACSSVPVITDSNSQDTEIRR
Intron Amino Acid Position:
368

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
77.3
37.6
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
80.1
0.68
0.8
78
30.9
Minor 5ss
36.9
-1.5
2.9
51.8
44.6
Minor BPS
50.8
0.02
1.7
58.43
41.2

Associated Gene:

Gene:
PTPN1
Ensembl Gene ID:
ENSAPLG00000008547
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031671
7636129 - 7677648
41520
ENSAPLT00000008897
7640298 - 7677140
36843