Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_7684764_7685886_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7684764 - 7685886

Intron Length:

1123

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAATGGCA

5'SS Class:

major

3'SS Sequence:

GTTTCACTTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTCAT

U12 Branch Point Sequence:

TTGTCATTTATT

Flanking Amino Acid:

DKHLGKLAKEVMLIEELQCP

Intron Amino Acid Position:

748

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.68

68.6

36.2

Major BPS

87.4

0.93

0.9

87.9

29.5

Major PPT

81.1

0.7

0.9

74.3

35.4

Minor 5ss

29.6

-2.3

3.4

39.3

Minor BPS

60.6

0.41

1.9

81.12

40.6

Associated Gene:

Gene:

RIPOR3

Ensembl Gene ID:

ENSAPLG00000007994

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008327

7682113 - 7710875

28763

ENSAPLT00000045647

7681748 - 7706849

25102

ENSAPLT00000035847

7682113 - 7709318

27206

ENSAPLT00000027506

7681748 - 7733434

51687

ENSAPLT00000018174

7681748 - 7707070

25323