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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_7687893_7688088_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7687893 - 7688088
Intron Length:
196

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTACC
5'SS Class:
strong_major
3'SS Sequence:
ATTCATTCAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTCATTCATT
Flanking Amino Acid:
LFGSIRTASISTYNDSTFQS
Intron Amino Acid Position:
560

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.87
0.9
78.8
35.5
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
72
0.49
1
66.7
38.5
Minor 5ss
35.6
-1.6
2.9
46
42.3
Minor BPS
61.1
0.43
2
83.58
37.4

Associated Gene:

Gene:
RIPOR3
Ensembl Gene ID:
ENSAPLG00000007994
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027506
7681748 - 7733434
51687
ENSAPLT00000018174
7681748 - 7707070
25323
ENSAPLT00000008327
7682113 - 7710875
28763
ENSAPLT00000045647
7681748 - 7706849
25102
ENSAPLT00000035847
7682113 - 7709318
27206