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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_7688229_7688922_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7688229 - 7688922
Intron Length:
694

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGGTGG
5'SS Class:
major
3'SS Sequence:
ATTCTATCAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAC
U12 Branch Point Sequence:
ATTCTATCAACA
Flanking Amino Acid:
QVLSMRDKLKLKTLHHRRSS
Intron Amino Acid Position:
514

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.1
61.5
45.6
Major BPS
61.3
0.28
1
62
30.6
Major PPT
72.5
0.51
1
67.3
37.6
Minor 5ss
35.1
-1.7
3.4
46.9
48.5
Minor BPS
52.8
0.09
1.8
68.93
36.6

Associated Gene:

Gene:
RIPOR3
Ensembl Gene ID:
ENSAPLG00000007994
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035847
7682113 - 7709318
27206
ENSAPLT00000027506
7681748 - 7733434
51687
ENSAPLT00000018174
7681748 - 7707070
25323
ENSAPLT00000008327
7682113 - 7710875
28763
ENSAPLT00000045647
7681748 - 7706849
25102