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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_7689505_7690158_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7689505 - 7690158
Intron Length:
654

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTATTTGCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATACAT
U12 Branch Point Sequence:
TATACATTTATT
Flanking Amino Acid:
TPSFREKYYLSVLQQRQNQG
Intron Amino Acid Position:
320

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.8
79.6
35.4
Major BPS
74.9
0.62
1
81.3
29.9
Major PPT
82.3
0.73
0.9
77.5
36.6
Minor 5ss
34
-1.8
2.8
39.3
40.3
Minor BPS
53.2
0.18
1.9
75.33
41.2

Associated Gene:

Gene:
RIPOR3
Ensembl Gene ID:
ENSAPLG00000007994
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018174
7681748 - 7707070
25323
ENSAPLT00000008327
7682113 - 7710875
28763
ENSAPLT00000045647
7681748 - 7706849
25102
ENSAPLT00000035847
7682113 - 7709318
27206
ENSAPLT00000027506
7681748 - 7733434
51687