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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_7690289_7697047_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7690289 - 7697047
Intron Length:
6759

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTGCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAC
U12 Branch Point Sequence:
TTGTACTGACAC
Flanking Amino Acid:
TIKLQLEVLWKPFDTENLFL
Intron Amino Acid Position:
276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
83.5
27.8
Major BPS
73.6
0.59
0.9
63.3
35.6
Major PPT
85.2
0.79
0.8
79.9
32.2
Minor 5ss
37.7
-1.4
2.7
44.2
37
Minor BPS
46.8
-0.2
2
61.72
43.1

Associated Gene:

Gene:
RIPOR3
Ensembl Gene ID:
ENSAPLG00000007994
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035847
7682113 - 7709318
27206
ENSAPLT00000027506
7681748 - 7733434
51687
ENSAPLT00000018174
7681748 - 7707070
25323
ENSAPLT00000008327
7682113 - 7710875
28763
ENSAPLT00000045647
7681748 - 7706849
25102