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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_7696929_7697047_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7696929 - 7697047
Intron Length:
119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTATTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
CTCTTTCTATTT
Flanking Amino Acid:
TIKLQLEVLWKAGAG*
Intron Amino Acid Position:
312

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
83.5
27.8
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
89.8
0.9
0.7
85.1
28.4
Minor 5ss
37.7
-1.4
2.7
44.2
37
Minor BPS
46.3
-0.2
1.9
62.98
42.5

Associated Gene:

Gene:
RIPOR3
Ensembl Gene ID:
ENSAPLG00000007994
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023000
7695319 - 7710903
15585