Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_7697194_7699314_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7697194 - 7699314

Intron Length:

2121

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGTGGTGT

5'SS Class:

major

3'SS Sequence:

TTTGTCTCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAAAAAT

U12 Branch Point Sequence:

TATCTGCTAAGA

Flanking Amino Acid:

PNLHEQFEIKVTELRGLATI

Intron Amino Acid Position:

228

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.8

0.66

68.2

39.1

Major BPS

62.8

0.32

1.1

67.9

34.4

Major PPT

86.7

0.82

0.7

81.5

30.6

Minor 5ss

39.1

-1.2

3.3

55.4

48.8

Minor BPS

42.1

-0.6

2.4

58.23

41.1

Associated Gene:

Gene:

RIPOR3

Ensembl Gene ID:

ENSAPLG00000007994

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023000

7695319 - 7710903

15585

ENSAPLT00000018174

7681748 - 7707070

25323

ENSAPLT00000045647

7681748 - 7706849

25102

ENSAPLT00000008327

7682113 - 7710875

28763

ENSAPLT00000035847

7682113 - 7709318

27206

ENSAPLT00000027506

7681748 - 7733434

51687