Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_7700155_7700549_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7700155 - 7700549

Intron Length:

395

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGTTCT

5'SS Class:

strong_major

3'SS Sequence:

CTTTTCTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCAAAT

U12 Branch Point Sequence:

AACTCTTCAAAT

Flanking Amino Acid:

HLGEFHLKMKGLVGFARLCP

Intron Amino Acid Position:

162

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.2

0.92

0.8

83.2

29.4

Major BPS

77.3

0.68

81.5

Major PPT

93.5

0.98

0.6

92.1

18.4

Minor 5ss

48.9

-0.1

2.4

68.1

42.9

Minor BPS

55.4

0.25

1.6

69.25

41.4

Associated Gene:

Gene:

RIPOR3

Ensembl Gene ID:

ENSAPLG00000007994

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027506

7681748 - 7733434

51687

ENSAPLT00000023000

7695319 - 7710903

15585

ENSAPLT00000018174

7681748 - 7707070

25323

ENSAPLT00000045647

7681748 - 7706849

25102

ENSAPLT00000035847

7682113 - 7709318

27206