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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_7700614_7701595_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7700614 - 7701595
Intron Length:
982

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGGAAT
5'SS Class:
strong_major
3'SS Sequence:
GTCTTCCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
ATGCTTTTCACT
Flanking Amino Acid:
LYKNFQGCTEDMCFIEGALE
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
78.6
37.2
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
78.1
0.63
0.8
70
36.6
Minor 5ss
32.5
-2
3.5
47.3
48.3
Minor BPS
52.9
0.17
1.7
70.84
40.6

Associated Gene:

Gene:
RIPOR3
Ensembl Gene ID:
ENSAPLG00000007994
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027506
7681748 - 7733434
51687
ENSAPLT00000023000
7695319 - 7710903
15585
ENSAPLT00000018174
7681748 - 7707070
25323
ENSAPLT00000045647
7681748 - 7706849
25102
ENSAPLT00000035847
7682113 - 7709318
27206