Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_7701746_7702526_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7701746 - 7702526

Intron Length:

781

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGGGGG

5'SS Class:

strong_major

3'SS Sequence:

AAAAATCTTGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTAAA

U12 Branch Point Sequence:

TTTTCCTCACCT

Flanking Amino Acid:

IRKLEFHISKVEELYEAYCI

Intron Amino Acid Position:

136

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.87

0.9

67.8

43.5

Major BPS

75.2

0.63

1.1

75.9

36.3

Major PPT

60.3

0.23

52.1

42.3

Minor 5ss

28.6

-2.5

3.5

37.8

47.1

Minor BPS

71.8

0.76

1.8

92.41

36.6

Associated Gene:

Gene:

RIPOR3

Ensembl Gene ID:

ENSAPLG00000007994

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008327

7682113 - 7710875

28763

ENSAPLT00000035847

7682113 - 7709318

27206

ENSAPLT00000027506

7681748 - 7733434

51687

ENSAPLT00000023000

7695319 - 7710903

15585

ENSAPLT00000018174

7681748 - 7707070

25323

ENSAPLT00000045647

7681748 - 7706849

25102