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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_7703553_7706347_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7703553 - 7706347
Intron Length:
2795

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGGACT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTCTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAC
U12 Branch Point Sequence:
AAGGATATAACA
Flanking Amino Acid:
KIFEALKKGLNEYLEAHQAE
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
1
78.9
34.8
Major BPS
69.1
0.48
1
70
32.1
Major PPT
91.4
0.93
0.6
84.6
30.3
Minor 5ss
36.6
-1.5
3.3
50.4
39.9
Minor BPS
45.2
-0.3
1.8
52.77
39.1

Associated Gene:

Gene:
RIPOR3
Ensembl Gene ID:
ENSAPLG00000007994
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023000
7695319 - 7710903
15585
ENSAPLT00000045647
7681748 - 7706849
25102
ENSAPLT00000018174
7681748 - 7707070
25323
ENSAPLT00000035847
7682113 - 7709318
27206
ENSAPLT00000008327
7682113 - 7710875
28763
ENSAPLT00000027506
7681748 - 7733434
51687