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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_7706495_7706679_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7706495 - 7706679
Intron Length:
185

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGTGGG
5'SS Class:
major
3'SS Sequence:
TCTTTTTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
TTTCCCATATTT
Flanking Amino Acid:
PLLIFVLFFIGKSLNRSSVR
Intron Amino Acid Position:
41

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.1
59.7
45.2
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
92
0.95
0.6
87.6
22.8
Minor 5ss
37.7
-1.4
3.1
40.1
46
Minor BPS
59.2
0.37
1.9
82.67
38.5

Associated Gene:

Gene:
RIPOR3
Ensembl Gene ID:
ENSAPLG00000007994
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045647
7681748 - 7706849
25102