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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_7706495_7709218_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
7706495 - 7709218
Intron Length:
2724

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGAATG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
TTTCCCATATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1
75.5
40.6
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
92
0.95
0.6
87.6
22.8
Minor 5ss
36.6
-1.5
3
41.4
44.7
Minor BPS
59.2
0.37
1.9
82.67
38.5

Associated Gene:

Gene:
RIPOR3
Ensembl Gene ID:
ENSAPLG00000007994
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035847
7682113 - 7709318
27206