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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_7706495_7710774_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7706495 - 7710774
Intron Length:
4280

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTAAGTAAC
5'SS Class:
major
3'SS Sequence:
TCTTTTTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
TTTCCCATATTT
Flanking Amino Acid:
GFSTVQSRKLAKSLNRSSVR
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.3
72.3
39.5
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
92
0.95
0.6
87.6
22.8
Minor 5ss
37
-1.5
2.7
41.3
38.3
Minor BPS
59.2
0.37
1.9
82.67
38.5

Associated Gene:

Gene:
RIPOR3
Ensembl Gene ID:
ENSAPLG00000007994
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023000
7695319 - 7710903
15585
ENSAPLT00000008327
7682113 - 7710875
28763
ENSAPLT00000027506
7681748 - 7733434
51687